The central European country, which used a €20 billion euro aid deal from the IMF and the European Union to avoid insolvency as the crisis gripped its markets in 2008, has been at odds with the Fund under its current government, which took power in 2010.
Prime Minister Viktor Orbán's government, which faces an election in 2014, has sought to end what is has portrayed as undue foreign influence over its economic policies.
The last instalment of the loan was due in the third quarter of 2014 and the early repayment saved 3.5 billion forints (€11.7 million) in interest expenses, the ministry said.
Shortly after taking office in 2010, Prime Minister Orbán abruptly ended that program as the government sought to control the country's financial affairs on its own. It initiated an unorthodox campaign that included Europe's highest bank tax and special levies on business (see background and related news).
Based on a summary by the country's debt agency, Hungary had been due to repay the equivalent of €913 million to the IMF in each of the third and fourth quarters and another €299 million in the first quarter of 2014, an election year.
Last month the Central bank chief György Matolcsy, Orbán's former economy minister, announced he would initiate closure of the IMF's resident representative office in Budapest, saying it was "not necessary to maintain" any longer.