Pöttering received almost two-thirds of the votes in a 16 January 2007 ballot at the European Parliament in Strasbourg. However, the outcome hardly came as a surprise. An inter-party agreement made at the start of the parliamentary term included the Conservatives' voting for Pöttering predecessor Josep Borrell Fontelles (PSE, Spain) as the 6th European Parliament's first president in 2004. The agreement was concluded because none of the two major groups has 345 members - the absolute majority of MEPs needed to get a candidate elected.
In the 16 January 2007 ballot, almost a hundred MEPs failed to cast a valid vote. Pöttering got 65.3% of the votes, slightly more than the 63% that the two groups officially supporting him would be expected to gather. Of the other candidates, Green co-Chair Monica Frassoni, an Italian, ended up best with more than a fifth of the votes, or almost four times her party's percentage, due presumably to support from the liberal ALDE group.
| Group | Members | % of total members | Candidate | Votes for candidate | % |
| EPP-ED |
277 |
35,3 | Hans-Gert Pöttering | 450 | 65.3 |
| PSE |
217 |
27,7 |
|
|
|
| ALDE |
106 |
13,5 |
|
|
|
| UEN |
44 |
5,6 |
|
|
|
| Greens/EFA |
42 |
5,4 | Monica Frassoni | 145 | 21,0 |
| EUL/NGL |
41 |
5,2 | Francis Wurtz | 48 | 7,0 |
| IND/DEM |
23 |
2,9 | Jens-Peter Bonde | 46 | 6,7 |
| ITS |
20 |
2,6 |
|
|
|
| Non-attached members |
14 |
1,8 |
|
|
|
| Total |
784 |
|
689 |
|
Following Pöttering's election, the Parliament's vice-presidents were elected. The elected were:
- Rodi Kratsa-Tsagoropoulo (EPP-ED, Greece): 322 votes
- Alejo Vidal-Quadras (EPP-ED, Spain): 300 votes
- Gérard Onesta (Greens/EFA, France): 285 votes
- Edward McMillan-Scott (EPP-ED, UK): 274 votes
- Mario Mauro (EPP-ED, Italy): 262 votes
- Miguel Angel Martínez Martínez (PSE, Spain): 260 votes
- Luigi Cocilovo (ALDE, Italy): 234 votes
- Mechthild Rothe (PSE, Germany): 217 votes
- Luisa Morgantini (EUL/NGL, Italy): 207 votes
- Pierre Moscovici (PSE, France): 207 votes
- Manuel António dos Santos (PSE, France) 193 votes
- Diana Wallis (ALDE, UK): 192 votes
- Marek Maciej Siwiec (PSE, Poland): 180 votes
- Adam Bielan (UEN, Poland): 128 votes
The following were elected as quaestors, in charge of running the Parliament's day-to-day internal business:
- James Nicolson (EPP-ED, UK): 334 votes
- Astrid Lulling (EPP-ED, Luxembourg): 298 votes
- Mia De Vits (PSE, Belgium): 285 votes
- Ingo Friedrich (EPP-ED , Germany): 280 votes
- Szabolcs Fazakas (PSE, Hungary): 267 votes
- Jan Mulder (ALDE, Netherlands) : 265 votes



